This website is built using Shiny [1]. The (micro)RNA-seq analysis is performed using DESeq2 [2]. The microscopy images are displayed using EBImage [3].
[1]: Winston Chang, Joe Cheng, JJ Allaire, Yihui Xie and Jonathan McPherson (2018). shiny: Web Application Framework for R. R package version 1.2.0. https://CRAN.R-project.org/package=shiny
[2]: Love, M.I., Huber, W., Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Genome Biology 15(12):550 (2014)
[3]: Gregoire Pau, Florian Fuchs, Oleg Sklyar, Michael Boutros, and Wolfgang Huber (2010): EBImage - an R package for image processing with applications to cellular phenotypes. Bioinformatics, 26(7), pp. 979-981, 10.1093/bioinformatics/btq046